Diseases, as per group, for which the diagnosis are done
Anthrax
Babesiosis
Bluetongue
Botulism
Brucellosis
Crimean-Congo haemorrhagic fever
Cysticercosis
E.coli infection
Echinococcosis
Epizootic haemorrhagic disease
Foot and mouth disease
Glanders
Heartwater
Hepatitis-Duck Virus Hepatitis (DVH)
Japanese encephalitis
LeishInfluenza (Equine & Pigs)
Leishmaniosis
Leptospirosis
Mammalian tuberculosis
New World screwworm
Nipah and Hendra virus disease
Paratuberculosis (Johne's disease)
Plague
Pox
Q fever
Rabies
Rift Valley fever
Rinderpest
Salmonellosis
Surra in all species
Swine fever
Tetanus
Trichinellosis
Tuberculosis
Tularemia
Vesicular stomatitis
West Nile fever
Canine distemper
Bovine anaplasmosis
Bovine babesiosis
Bovine cysticercosis
Bovine genital campylobacteriosis
Bovine spongiform encephalopathy
Bovine tuberculosis
Bovine viral diarrhoea
Contagious bovine pleuropneumonia
Enzootic bovine leukosis
Haemorrhagic septicaemia
Infectious bovine rhinotracheitis/infectious pustular vulvovaginitis
Lumpy skin disease
Malignant catarrhal fever
Nagana: infections with salivarian trypanosomoses (excluding
Trypanosoma evansi and T. equiperdum)
Theileriosis in cattle
Trichomonosis
African horse sickness
Contagious equine metritis
Dourine in horses
Epizootic lymphangitis
Equine encephalomyelitis
Equine infectious anaemia
Equine influenza
Equine piroplasmosis
Equine rhinopneumonitis
Equine viral arteritis
Glanders and melioidosis
Camelpox
Middle East respiratory syndrome
Aspergillosis
Avian chlamydiosis
Avian infectious bronchitis
Avian infectious laryngotracheitis
Avian influenza
Avian mycoplasmosis
Avian tuberculosis
Campylobacter
Colibacillosis
Duck virus enteritis
Duck virus hepatitis
Fowl cholera
Fowl pox
Fowl typhoid and Pullorum disease
Infectious bursal disease
Marek’s disease
Newcastle disease
Pseudomonas
Salmonellosis
Streptococcus
Turkey rhinotracheitis
Mycoplasma
Myxomatosis
Rabbit haemorrhagic disease
Border disease
Caprine arthritis/encephalitis and Maedi-visna
Contagious agalactia
Contagious caprine pleuropneumonia
Enzootic abortion of ewes (ovine chlamydiosis)
Nairobi sheep disease
Ovine epididymitis (Brucella ovis)
Ovine pulmonary adenocarcinoma
Peste des petits ruminants (infection with small ruminant
morbillivirus)
Salmonellosis (S. abortusovis)
Scrapie
Sheep pox and goat pox
Theileriosis in sheep and goats (infection with Theileria lestoguardi, T.
luwenshuni and T. uilenbergi)
African swine fever
Atrophic rhinitis of swine
Classical swine fever
Nipah virus encephalitis
Porcine cysticercosis
Porcine reproductive and respiratory syndrome
Influenza A virus of swine
Swine vesicular disease
Teschovirus encephalomyelitis
Transmissible gastroenteritis
Acarapisosis of honey bees
American foulbrood of honey bees
European foulbrood of honey bees
Nosemosis of honey bees
Infestation of honey bees with Aethina tumida (small hive beetle)
Infestation of honey bees with Tropilaelaps spp.
Varroosis of honey bees (infestation of honey bees with Varroa spp.)
Metagenomics-NGS approach is advantageous when there is little or no information is available on the type of pathogen. This technique provides a holistic picture of all types of pathogens (viral/ bacterial/fungal) that may be previously known or new present in a sample. Another advantage is multiple samples may be processed simultaneously.
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